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PepcDB | Target Search Help

Content and Report Formats:

Project Target ID

  • A unique identifier for the target sequence defined by each structural genomics center.

Examples:
  • WR90EC
  • NYSGRC-P007
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PDB ID

  • A unique 4 character alphanumeric identifier for the structure that has been deposited in Protein Data Bank (PDB).

Examples:
  • 1EKE
  • 1STZ
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PFAM ID

  • Protein domain accession number from PFAM.

Examples:
  • PF00005
  • PF00137
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Site

  • Name of Structural Genomics Center

To search targets from a single Structural Genomics center, select one of the project sites from the list below.

The NIH Structural Genomics Centers: Other Projects: Asia: Europe:
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Lab Name

  • The Laboratory Name

Examples:
  • Los Alamos National Laboratory - Yvonne Rogers
  • NYSGRC
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Status

  • The status of the target sequence.

Examples:
  • Selected
  • Cloned
  • Expressed
  • Soluble
  • Purified
  • Crystallized
  • Diffraction-quality Crystals
  • Diffraction
  • HSQC
  • NMR Assigned
  • Crystal Structure
  • NMR Structure
  • In PDB
  • Work Stopped
  • Test Target
  • Other
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Stop Status

  • Target status termination code

Examples:
  • Expression failed
  • Cloning failed
  • Purification failed
  • Crystallization failed
  • Poor diffraction
  • Duplicate target found
  • Other
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Include Data From

  • The source of sequence data

To search only target data provided by the NIH Structural Genomics Centers, select Only NIH Centers.
To include sequences from worldwide Structural Genomics Centers in a query, select All Structural Genomics Centers.
To include sequences from the Protein Data Bank (PDB) in a query, select All Structural Genomics Centers + PDB.
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Target Data Updated

  • The latest update of information on a target sequence

Examples:
  • Before: 2001-05-10
  • After : 2001-01-21
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Protein Name

  • The name of the protein for the target sequence.

Examples:
  • Glutamate synthase
  • 29-C10
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Source Organism

  • The scientific name of the source organism for the target sequence.

Examples:
  • Arabidopsis thaliana
  • Escherichia coli
  • Caenorhabditis elegans
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Protocol Type

  • The types of Protocols

Examples:
  • Cloning Protocol
  • Purification Protocol
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Protocol ID

  • The Identifier for protocol information

Examples:
  • 1_1_cloning
  • 4_1_purification
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Protocol Keywords

  • This field allows you search all targets that match the "key words" in <protocolList>.

Examples:
  • VDX
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